Software

 

histoCAT:

histoCAT is a platform for Imaging Mass Cytometry multidimensional image analysis

Downloads for histoCAT Here

Check out The Manuscript (Schapiro et al. 2017, Nature Methods). Here

Downloads for histoCAT++ Here

Check out The Manuscript (Catena et al. 2018, Journal of Pathology). Here

 

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AirLab:

AirLab is a cloud-based laboratory-management tool tailored for antibody-based research.
Manage easily

  • Antibody stocks
  • Panels for CyTOF and Helios
  • Results and experiments

AirLab is available at www.airlaboratory.ch
You can also download the iPhone/iPad app and connect to AirLab from the iTunes App Store and carry your laboratory in your pocket.
The code for this project is available at GitHub

Check out AirLab’s publication in Genome Biology.

Catena et al. 2016, Genome biology

 

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Adnet:

Adnet is a set of analysis scripts used for the paper: “Influence of node abundance on signaling network state and dynamics analyzed by mass cytometry” Xiao-Kang Lun, Vito RT Zanotelli, James D Wade, Denis Schapiro, Marco Tognetti, Nadine Dobberstein & Bernd Bodenmiller

The repository is available in Github

Check out The Manuscript here. Lun et al. 2017, Nature Biotechnology biology